Epitope:
---Select---
AALLADKFPV
ADLDDFSKQL
AFLPFAMGI
AIASEFSSL
AIFYLITPV
AIMTRCLAV
AINRPQIGV
AIPTNFTISV
ALAPNMMV
ALAPNMMVT
ALCADSIII
ALDISASIV
ALFAYTKRNV
ALGGSVAIKI
ALGKLQDVV
ALGVLMSNL
ALITLATCEL
ALLADKFPV
ALLADKFPVL
ALLAGTITS
ALLAVFQSA
ALLEDEFTPF
ALLEDEFTP
ALLSDLQDL
ALLTLQQIEL
ALNKATNNA
ALNLGETFV
ALNNIINNA
ALNTLVKQL
ALPETTADI
ALPETTADIV
ALQDAYYRA
ALQIPFAMQM
ALRANSAVKL
ALSKGVHFV
ALVSDVGDSA
ALVYDNKLKA
ALVYFLQSI
ALWEIQQV
ALWEIQQVV
ALYYPSARI
ALYYPSARIV
AMGIIAMSA
AMQTMLFTM
AMRNAGIVGV
AMSAFAMMFV
AMYTPHTV
AMYTPHTVL
AQFAPSASA
AQVDVVNFNL
ASFDNFKFV
ASLPFGWLI
ATIPIQASL
ATVAYFNMV
AVANGDSEV
AVASKILGL
AVIKTLQPV
AVINGDRWFL
AVLDMCASL
DLFMRIFTI
DLNETLVTM
ELDERIDKV
ELFENKTTL
ELLHAPATV
ELTPVVQTI
ELYSPIFLI
ELYSPIFLIV
FAFACPDGV
FAQDGNAAI
FCLEASFNYL
FCNDPFLGV
FDMSKFPLKL
FELDERIDKV
FELLHAPATV
FFFYENAFL
FGADPIHSL
FGDDTVIEV
FGMSRIGMEV
FHLDGEVITF
FHLVDFQVTI
FIAGLIAIV
FIASFRLFA
FIEDLLFNKV
FIRQEEVQEL
FISDEVARDL
FITESKPSV
FKLNEEIAII
FKLSYGIATV
FKLVNKFLAL
FLAFVVFL
FLAFVVFLL
FLAHIQWMV
FLALCADSI
FLALITLA
FLALITLAT
FLARGIVFM
FLEGETLPT
FLELAMDEFI
FLEMKSEKQV
FLEYHDVRV
FLEYHDVRVV
FLFVAAIFYL
FLGIITTVA
FLGIITTV
FLGRYMSAL
FLHFLPRV
FLHVTYVPA
FLIGCNYL
FLIVAAIVFI
FLKKDAPYI
FLKKDAPYIV
FLKRGDKSV
FLLNKEMYL
FLLPSLATVA
FLLPSLATV
FLLVTLAIL
FLMSFTVLC
FLMSFTVLCL
FLMSFTVL
FLNGSCGSV
FLNKVVSTT
FLNRFTTTL
FLPFAMGI
FLPFFSNV
FLPGVYSVI
FLPGVYSV
FLPRVFSA
FLPRVFSAV
FLQSINFV
FLQSINFVRI
FLRDGWEI
FLRDGWEIV
FLTENLLL
FLTENLLLYI
FLTENLLLY
FLVFLGIITT
FLVLLPLV
FLVQAGNVQL
FLWLLWPV
FLWLLWPVTL
FPLNSIIKTI
FQFCNDPFL
FQSASKIITL
FSASTSAFV
FSYFAVHFI
FTISVTTEI
FVAAIFYLI
FVCDNIKFA
FVDGVPFV
FVDGVPFVV
FVDRQTAQA
FVENPDILRV
FVFPLNSII
FVLAAVYRI
FVLWAHGFEL
FVMMSAPPA
FVNEFYAYL
FVSDADSTL
FVSEETGTL
FVSNGTHWFV
FVTVYSHLL
FVVPGLPGTI
FVVPGLPGT
FYLITPVHVM
FYLTNDVSFL
GALDISASI
GDISGINASV
GINASVVNI
GISQYSLRL
GKIADYNYKL
GLAAIMQLF
GLAAIMQL
GLALYYPSA
GLCVDIPGI
GLEAPFLYL
GLFKDCSKV
GLIAIVMV
GLIAIVMVTI
GLIAIVMVT
GLLPPKNSI
GLMWLSYFI
GLNDNLLEI
GLNDNLLEIL
GLNGYTVEEA
GLPGTILRT
GLPWNVVRI
GLTVLPPLL
GLVAEWFLA
GLVEVEKGV
GLVEVEKGVL
GLWLDDVV
GLWLDDVVYC
GLYPTLNI
GLYPTLNIS
GMSRIGMEV
GMVLGSLAA
GNLHPDSATL
GQINDMILSL
GQQFGPTYL
GRLQSLQTYV
GVAPGTAVL
GVDIAANTV
GVFCGVDAV
GVGYQPYRV
GVVTTVMFL
GVYDYLVST
GVYSVIYLYL
GWLIVGVALL
GYLNSTNVTI
HLDGEVITF
HLIPLMYKGL
HLKDGTCGL
HLLLVAAGL
HLMSFPQSA
HLVDFQVTIA
HLVDFQVTI
HMLDMYSV
HMLDMYSVM
HMLDMYSVML
HPLADNKFAL
HTIDGSSGV
HVMVELVAEL
HVVAFNTLL
IAIPTNFTI
IFFASFYYV
IFVDGVPFV
IFVDGVPFVV
IIFLEGETL
IIQFPNTYL
IITTDNTFV
IIWFLLLSV
ILANTCTERL
ILASFSAST
ILAYCNKTV
ILDGISQYS
ILDGISQYSL
ILFLALITL
ILFTRFFYV
ILGLPTQTV
ILGPLSAQT
ILGTVSWNL
ILHCANFNV
ILKPANNSL
ILLAKDTTEA
ILLLDQALV
ILLNKHIDA
ILNNLGVDI
ILQKEKVNI
ILSDDAVVC
ILSDDAVV
ILSPLYAFA
ILTSLLVLV
INVFAFPFTI
IQPGQTFSV
ISDEFSSNV
ISMDNSPNL
ISMWALIISV
ITFDNLKTL
IVAGGIVAI
IVAGGIVAIV
IVDEPEEHV
IVDTVSALV
IVGDVVQEGV
IVGVALLAV
IVNSVLLFL
KALNLGETFV
KIADYNYKL
KIAEIPKEEV
KIFVDGVPFV
KIILFLALI
KILGLPTQTV
KITEHSWNA
KIVDEPEEHV
KIYSKHTPI
KKLLEQWNLV
KLALGGSVAI
KLDDKDPNF
KLDGFMGRI
KLDGVVCTEI
KLDNDALNNI
KLFAAETL
KLFAAETLKA
KLFDRYFKY
KLFIRQEEV
KLGSLVVRC
KLHDELTGHM
KLIEYTDFA
KLIEYTDFAT
KLINIIIWF
KLINIIIWFL
KLKDCVMYA
KLKPVLDWL
KLKTLVATA
KLLEQWNL
KLLEQWNLVI
KLLEQWNLV
KLLKSIAAT
KLMPVCVET
KLNDLCFTNV
KLNEEIAII
KLNEEIAIIL
KLNEEIAI
KLNIKLLGV
KLNVGDYFV
KLNVGDYFVL
KLPDDFTGC
KLPDDFTGCV
KLQDVVNQNA
KLQFTSLEI
KLQNNELSPV
KLRGTAVMSL
KLRSDVLLPL
KLSHQSDIEV
KLSYGIATV
KLTDNVYI
KLVLSVNPYV
KLVNKFLAL
KLVSSFLEM
KLWAQCVQL
KMADQAMTQM
KMAFPSGKV
KMFDAYVNTF
KMFDAYVNT
KMSDVKCTSV
KMVSLLSVL
KNLNESLIDL
KNLSDRVVFV
KNLYDKLVSS
KQGDDYVYL
KQIYKTPPI
KQLIKVTLV
KQVVSDIDYV
KTIGPDMFL
KTLQPVSELL
KVAGFAKFL
KVDGVDVEL
KVDGVVQQL
KVEGCMVQV
KVFTTVDNI
LALSKGVHFV
LAWPLIVTA
LIIMRTFKV
LIVAAIVFI
LLADKFPV
LLADKFPVL
LLAKDTTEA
LLALHRSYL
LLAPLLSAGI
LLDDFVEII
LLDDFVEI
LLDQALVSDV
LLEQWNLVI
LLESELVIGA
LLFLMSFTV
LLFNKVTLA
LLFNKVTL
LLHKPIVWHV
LLIVNNATNV
LLLDDFVEII
LLLDDFVEI
LLLDQALV
LLLDRLNQL
LLLLDRLNQL
LLLTILTSL
LLMPILTL
LLMPILTLT
LLPSLATV
LLSAGIFGA
LLTILTSLL
LLTLQQIEL
LLTNMFTPL
LLTPLGIDL
LLVAAGLEA
LLWPVTLAC
LLYDANYFL
LLYIDINGNL
LMCQPILLL
LMDGSIIQF
LMIERFVSL
LMWLIINLV
LMYKGLPWNV
LQAENVTGL
LQAGNATEV
LQIPFAMQM
LQLGFSTGV
LQNNELSPV
LVFLGIITTV
LVLSVNPYV
LVSDIDITFL
LWAHGFEL
LYDANYFL
MELTPVVQTI
MIAQYTSAL
MILSDDAVV
MLAKALRKV
MLDMYSVML
MLFTMLRKL
MLNPNYEDL
MLNPNYEDLL
MLSDTLKNL
MLVKQGDDYV
MLWCKDGHV
MMILSDDAV
MMISAGFSL
MMVTNNTFTL
MQVESDDYI
MVLGSLAATV
MVMCGGSLYV
MVTNNTFTL
MVYMPASWV
NDLNETLVTM
NLACEDLKPV
NLAKHCLHV
NLAWPLIVTA
NLAWPLIVT
NLDYIINLI
NLDYIINL
NLHPDSATL
NLHPDSATLV
NLIDSYFV
NLIDSYFVV
NLLKDCPAV
NLLLLFVTV
NLNESLIDL
NLREMLAHA
NLSDRVVFV
NLSDRVVFVL
NLVAVPTGYV
NLVIGFLFL
NLWNTFTRL
NLYDKLVSS
NMFTPLIQPI
NMLRIMASL
NMMISAGFSL
NTFSSTFNV
NTLNDLNETL
NTQEVFAQV
NVFAFPFTI
NVLAWLYAA
NVLTLVYKV
NVYADSFVI
PLADNKFAL
PLVDLPIGI
PVYSFLPGV
QELYSPIFLI
QIDGYVMHA
QINDMILSL
QLCQYLNTL
QLDEEQPMEI
QLEMELTPV
QLEMELTPVV
QLFFSYFAV
QLGFSTGVNL
QLGGLHLLI
QLHNDILLA
QLLFVVEVV
QLMCQPILL
QLMCQPILLL
QLNRALTGI
QLSLPVLQV
QMAPISAMV
QMEIDFLELA
QQGEVPVSI
QVDVVNFNL
QVVSDIDYV
RAMPNMLRI
RDLYDKLQFT
RIDGDMVPHI
RIFTIGTVTL
RIIPARARV
RILGAGCFV
RIMASLVLA
RIMTWLDMV
RIQPGQTFSV
RITGLYPTL
RLANECAQV
RLDKVEAEV
RLFARTRSM
RLIDAMMFT
RLIDAMMFTS
RLITGRLQSL
RLNEVAKNL
RLQAGNATEV
RLQSLQTYV
RLSFKELLV
RLTLGVYDYL
RLYLDAYNM
RLYLDAYNMM
RPLLESELVI
RQLLFVVEV
RSLPGVFCGV
RTIKVFTTV
RVWTLMNVL
RVYSTGSNV
SALWEIQQVV
SFLAHIQWMV
SFLPGVYSV
SIAIPTNFTI
SIDAFKLNI
SIIAYTMSL
SIIKTIQPRV
SIIQFPNTYL
SIVAGGIVAI
SIWNLDYII
SKLIEYTDFA
SLAIDAYPL
SLAIDAYPLT
SLDNVLSTFI
SLDNVLSTF
SLDTYPSL
SLENVAFNV
SLENVAFNVV
SLETIQITI
SLFDMSKFPL
SLIDLQEL
SLINTLNDL
SLIYSTAAL
SLKVPATVSV
SLLMPILTL
SLLMPILTLT
SLLSVLLSM
SLPFGWLIV
SLPGVFCGV
SLPSYAAFA
SLQTYVTQQL
SLREVRTIKV
SLRPDTRYV
SLSHRFYRL
SLSSTASAL
SLVKPSFYV
SMATNYDLSV
SMDNSPNLA
SMQNCVLKL
SMSYEDQDAL
SMWALIISV
SMWSFNPET
SQLGGLHLLI
SQLGGLHLL
SQLMCQPILL
SQMEIDFLEL
SRLDKVEAEV
STDTGVEHV
STLIGDCATV
STSAFVETV
SVAALTNNV
SVFNICQAV
SVLLFLAFV
SVLNDILSRL
SVLYYQNNV
SVTTEILPV
SVVSKVVKV
SWLMWLIINL
TIAEILLII
TIVEVQPQL
TLACFVLAA
TLACFVLAAV
TLATHGLAA
TLATHGLAAV
TLAVPYNMRV
TLDSKTQSL
TLEPEYFNSV
TLETAQNSV
TLGVLVPHV
TLGVYDYLV
TLIGDCATV
TLIGEAVKT
TLIVNSVLL
TLKNTVCTV
TLMIERFVSL
TLMNVLTL
TLMNVLTLV
TLNDFNLVA
TLNDFNLVAM
TLNDFNLV
TLNDLNETL
TLNDLNETLV
TLPKGIMMNV
TLPVNVAFEL
TLQAENVTGL
TLQPVSELL
TLSEQLDFI
TLVPQEHYV
TLVSDIDITF
TLVTMPLGYV
TMADLVYAL
TMCDIRQLL
TPVYSFLPGV
TQAPTHLSV
TQYNRYLAL
TTIQTIVEV
TTLKGVEAV
TTLNDFNLVA
TVASLINTL
TVYDPLQPEL
TVYEKLKPV
TVYSHLLLV
TVYTKVDGV
TWLDMVDTSL
VELFENKTTL
VFLGIITTV
VIGIVNNTV
VINGDRWFL
VLAWLYAAV
VLCNSQTSL
VLGLAAIMQL
VLGSLAATV
VLHDIGNPKA
VLHSTQDLFL
VLLAPLLSA
VLLFLAFVV
VLLSMQGAV
VLLSVLQQL
VLMDGSII
VLMDGSIIQF
VLNDILSRL
VLNNDYYRSL
VLPNDDTLRV
VLPQLEQPYV
VLQAVGACV
VLQKAAITI
VLQLPQGTTL
VLQVRDVLV
VLSDRELHL
VLSEARQHL
VLSFCAFAV
VLSFELLHA
VLSTFISAA
VLSVNPYV
VLVPHVGEI
VLVRGFGDSV
VLWAHGFEL
VLYENQKLIA
VLYENQKLI
VLYQPPQTSI
VLYYQNNVFM
VMAYITGGV
VMCGGSLYV
VMPLSAPTL
VMPLSAPTLV
VMVELVAEL
VMYASAVVL
VMYASAVVLL
VQEGVLTAV
VQLHNDILLA
VQLHNDILL
VQLSLPVLQV
VQMAPISAM
VQMAPISAMV
VSLVKPSFYV
VTIAEILLI
VTWFHAIHV
VVADAVIKTL
VVDSYYSLL
VVFDEISMA
VVFLHVTYV
VVIGIVNNTV
VVISSDVLV
VVLLSVLQQL
VVMAYITGGV
VVNAANVYL
VVNPVMEPI
VVQEGVLTA
VVQEGVLTAV
WLDDDSQQT
WLDDDSQQTV
WLDMVDTSL
WLIINLVQM
WLIVGVALL
WLLWPVTLA
WLMWLIINL
WLPTGTLLV
WLTNIFGTV
WLTYTGAIKL
WMVMFTPLV
WTLMNVLTLV
YADVFHLYL
YDLSVVNARL
YFLQSINFV
YHLMSFPQSA
YIATNGPLKV
YIDIGNYTV
YIFFASFYYV
YIINLIIKNL
YILFTRFFYV
YITGGVVQL
YIVDSVTV
YIWLGFIAGL
YKLNVGDYFV
YLASGGQPI
YLATALLTL
YLAVFDKNL
YLDAYNMMI
YLDAYNMM
YLDGADVTKI
YLEGSVRV
YLEGSVRVV
YLFDESGEF
YLFQHANL
YLGGMSYYC
YLGKPREQI
YLGTGPEAGL
YLITPVHV
YLITPVHVM
YLKLRSDVLL
YLKLTDNVYI
YLKSPNFSKL
YLNSTNVTIA
YLNSTNVTI
YLNTLTLAV
YLPQNAVVKI
YLPYPDPSRI
YLQPRTFL
YLQPRTFLL
YLTFYLTNDV
YLTNDVSFLA
YLTNDVSFL
YLVQQESPFV
YLYALVYFL
YLYFIKGL
YLYLTFYL
YLYLTFYLT
YMPASWVMRI
YMPYFFTL
YMPYFFTLL
YNLLKDCPAV
YNLWNTFTRL
YPIIGDELKI
YQDVNCTEV
YQHEETIYNL
YQVNGYPNM
YRLANECAQV
YRLYLDAYNM
YSFLPGVYSV
YSLLMPILTL
YTMADLVYA
YTMADLVYAL
YTNSFTRGV
YTVEEAKTV
YTVELGTEV
YVDNSSLTI
YVFCTVNAL
YVLPNDDTL
YVVDDPCPI
YVWKSYVHV
YVWKSYVHVV
YVYIGDPAQL
YVYNPFMIDV
YVYSRVKNL
YYLFDESGEF
NetMHCpan-4.0 predictions:
Download top 3 models
(α1 / α2 domains only)
Top scoring 9mer peptide: TMADLVYAL
(to navigate: orient the molecule with the straight α-helix toward the top of the screen, then the peptide sequence is read left to right, N- to C-terminus)
Vertical black lines mark the %Rank and Rosetta binding energy of the current peptide. The background distributions are computed across all similar peptides in the set.
References:
Jurtz, V., S. Paul, M. Andreatta, P. Marcatili, B. Peters, and M. Nielsen. 2017. NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data. J. Immunol. Baltim. Md 1950 199: 3360–3368.
Nerli, S and Sgourakis, N. G. 2020. Manuscript submitted.
(
bioRxiv
)
Rego, N. and Koes, D. 3Dmol.js: molecular visualization with WebGL. Bioinformatics. 2014 31: 1322-1324